You can also browse my Google Scholar profile
and ResearchGate profile.
- Zongliang Yue, Xiangzhong Xue, Jingjing Qian*, (2024) The association between polypharmacy and health-related quality of life among older adults with prostate cancer. Journal of Geriatric Oncology, 15 (5), 101772. (Impact factor: 2.9)
- Fengyuan Huang, Robert Welner, Jake Y Chen*, Zongliang Yue*, (2024) PAGER-scFGA: Unveiling Cell Functions and Molecular Mechanisms in Cell Trajectories through Single-Cell Functional Genomics Analysis. Frontiers in Bioinformatics, 4, 1336135. (Impact factor: 2.8)
- Jinquan Chao, Yan Li, Shuguang Yang, Xingming Chen, Yilin He, Jianan Zhang, Zongliang Yue, Qiang Gao, Weimin Tian, (2024) Design and application of the HbGBTS80K liquid chip in rubber tree, Tropical Plants, 3 (1).
- Fengyuan Huang, Peng Xu, Zongliang Yue, Yuwei Song, Kaili Hu, Xinyang Zhao, Min Gao, Zechen Chong*, (2024) Body Weight Correlates with Molecular Variances in Patients with Cancer, Cancer Research, 84 (5), 757-770. (Impact factor: 12.7)
- Xuejia Kang, Yongzhuo Huang, Huiyuan Wang, Sanika Jadhav, Zongliang Yue, Amit K Tiwari, R Jayachandra Babu*, (2023) Tumor-Associated Macrophage Targeting of Nanomedicines in Cancer Therapy, Pharmaceutics. (Impact factor: 5.4)
- Zongliang Yue*, Da Yan, Guimu Guo, Jake Chen, (2023) Biological Network Mining, Biostatistics Research 1 (2023-1), 31-59
- Thanh Nguyen, Zongliang Yue, Radomir Slominski1, Robert Welner, Jianyi Zhang, and Jake Y. Chen, (2023) WINNER: a Network Biology Tool for Biomolecular Characterization and Prioritization. Frontiers in Big Data (Impact factor: 3.6)
- Christian T. Stackhouse, Joshua C Anderson, Zongliang Yue, Thanh Nguyen, Nicholas J Eustace, Lara Ianov, Catherine P. Langford, Jelai Wang, James R Rowland, Chuan Xing, Fady M. Mikhail, Eddy S Yang, Anita Hjelmeland, C. Ryan Miller, Jake Chen, G. Yancey Gillespie, and Christopher D Willey, (2022) A novel in vivo model of Glioblastoma radiation resistance identifies long non-coding RNAs and targetable kinases, JCI Insight.(Impact factor: 8.3)
- Zhenyu Weng#, Zongliang Yue#, Yuesheng Zhu*, Jake Yue Chen*, (2022) DEMA: a distance-bounded energy-field minimization algorithm to model and layout bio-molecliar networks with quantitative features, Bioinformatics. (Impact factor: 6.9)
- Zongliang Yue, Radomir Slominski, Samuel Bharti and Jake Y. Chen*, (2022) PAGER Web APP: An interactive, online gene set and network interpretation tool for functional genomics, Front. in Genetics. (Impact factor: 4.2)
- Carlene L. Zindl#, Steven J. Witte#, Vincent A. Laufer#, Min Gao, Zongliang Yue, Karen M. Janowski, Baiyi Cai, Blake F. Frey, Daniel J. Silberger, Stacey N. Harbour, Jeffrey R. Singer, Henrietta Turner, Frances E. Lund, Bruce A. Vallance, Alexander F. Rosenberg, Trenton R. Schoeb, Jake Y. Chen, Robin D. Hatton, and Casey T. Weaver, (2022) A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts, Immunity. (Impact factor: 31.7)
- Thanh M. Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey and Jake Y. Chen*, (2021) Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples, Front. Big Data | doi: 10.3389/fdata.2021.725276 (Impact factor: 3.6)
- Zongliang Yue, Da Yan., Guimu Guo, and Jake Y. Chen, (2021) Biological Network Mining. In: MUKHTAR S. (eds) Modeling Transcriptional Regliation. Methods in Molecliar Biology, vol 2328.
- Sweta B. Patel, Travis Nemkov, Davide Stefanoni, Gloria A. Benavides, Mahmoud A. Bassal, Brittany L. Crown, Victoria R. Matkins, Virginia Camacho, Valeriya Kuznetsova, Ashley T. Hoang, Danielle E. Tenen, Samuel L. Wolock, Jihye Park, Li Ying, Zongliang Yue, Jake Y. Chen, Henry Yang, Daniel G. Tenen, Pali Brent Ferrell, Rui Lu, Victor Darley-Usmar, Angelo D’Alessandro, Ravi Bhatia & Robert S. Welner, (2021) Metabolic alterations mediated by STAT3 promotes drug persistence in CML, Leukemia. (Impact factor: 11.5)
- Zongliang Yue#, Eric Zhang#, Clark Xu, Sunny Khurana, Nishant Batra, Son Dang, and Jake Y. Chen*, (2021) PAGER-CoV: A Pathway, Annotated-list and Gene-signature Electronic Repository for Coronavirus Diseases Studies, Nucleic Acids Research. (Impact factor: 16.9)
- Christian Stackhouse, James Rowland, Joshua Anderson, Jelai Wang, Thanh Nguyen, Zongliang Yue, Jake Chen, Lara Ianov, Yancey Gillespie, Christopher Willey, (2020) CBIO-12. THE ROLES OF lncRNAs IN GBM RADIATION RESISTANCE AND TUMOR RECURRENCE, Neuro-Oncology. (Impact factor: 12.3)
- CD Willey, CT Stackhouse, JR Rowland, CP Langford, JC Anderson, L Ianov, Z Yue, T Nguyen, AB Hjelmeland, JY Chen, GY Gillespie, (2020) Mliti-omic Exploration of Inherent and Acquired Radiation Resistance of Glioblastoma Patient-Derived Xenografts, International Journal of Radiation Oncology, Biology, Physics.
- Christian Tyler Stackhouse; James R. Rowland; Jelai Wang; Thanh Nguyen; Zongliang Yue; Jake Y. Chen; Lara Ianov; G. Yancey Gillespie; Christopher D. Willey, (2020) Long non-coding RNAs in glioblastoma tumor recurrence and therapy resistance, Cancer Res, 80 (16_Supplement): 279.
- Xiaowen Liu#, Zongliang Yue#, Yimou Cao#, Lauren Taylor, Qing Zhang, Sung W. Choi, Samir Hanash, Sawa Ito*, Jake Y. Chen*, Huanmei Wu*, and Sophie Paczesny*&, (2019) Graft-Versus-Host Disease–Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology, JCO personalized oncology. (Impact factor: 4.8)
- Zongliang Yue, Thanh Nguyen, Eric Zhang, Jianyi Zhang, Jake Y Chen, (2019) WIPER: Weighted in-Path Edge Ranking for biomolecliar association networks, Quantitative Biology. (Impact factor: 1.8)
- Zongliang Yue, Christopher D. Willey, Anita B Hjelmeland, and Jake Y. Chen*, (2019) BEERE: a Web Server for Biomedical Entity Expansion, Ranking, and Explorations. Nucleic Acids Research. (Impact factor: 16.9)
- Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Timothy Ratliff, and Jake Y. Chen*, (2018) “Super gene set” causal relationship discovery from functional genomics data, IEEE Transactions on Computational Biology and Bioinformatics. (Impact factor: 3.0)
- Zongliang Yue, Qi Zheng, Michael T. Neylon, Minjae Yoo, Jimin Shin, Zhiying Zhao, Aik Choon Tan, and Jake Y. Chen*, (2018) PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology. Nucleic Acids Research. (Impact factor: 16.9)
- Zongliang Yue, Itika Arora, Eric Y. Zhang, Vincent Laufer, S. Louis Bridges, and Jake Y. Chen§, (2017) Repositioning drugs by targeting network modlies: a Parkinson’s disease case study, BMC bioinformatics. (Impact factor: 3.1)
- Jake Y. Chen*, Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Nafisa Blisara, Itika Arora, and Timothy Ratliff, (2016) “Towards constructing ‘Super Gene Sets’ regliatory networks”, IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
- Xiaowen Liu*, Zongliang Yue, Jeffrey Yu, Etienne Daguindau, Qing Zhang, Yuko Ogata, Philip R. Gafken, Yoshihiro Inamoto, Adam Gracon, David Wilkes, John A. Hansen, Stephanie J. Lee, Jake Y. Chen§, and Sophie Paczesny§, (2016) Proteomic characterization reveals that MMP-3 correlates with bronchiolitis obliterans syndrome following allogeneic hematopoietic cell and lung transplantation, American Journal of Transplantation. (Impact factor: 8.0)
- Hui Huang, Thanh Nguyen, Sara Ibrahim, Sandeep Shantharam, Zongliang Yue, and Jake Y. Chen*, (2015) DMAP: a Connectivity Map Database to Enable Identification of Novel Drug Repositioning Candidates, BMC bioinformatics. (Impact factor: 3.1)
- Zongliang Yue, Madhura Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael Neylon, Liugen Zhu, Timothy Ratliff and Jake Y Chen*, (2015) PAGER: constructing PAGs and new PAG–PAG relationships for network biology, Bioinformatics. (Impact factor: 6.9)
- Zongliang Yue, Ping Wan, Zhan Xie, and Jake Y. Chen*, (2014) Computational Identification of De-centric Genetic Regliatory Relationships from Functional Genomic Data, Bioinformatics Research and Applications Lecture Notes in Computer Science Volume 8492, 2014, pp 224-235.
- Zongliang Yue, Ping Wan, Zhan Xie, and Jake Y. Chen*, (2014) SLDR: a computational technique to identify novel genetic regliatory relationships, BMC Bioinformatics (best paper) (Impact factor: 3.1)
- Ping Wan*,#, Zongliang Yue#, Zhan Xie#, Qiang Gao, Mengyao Yu, Zhiwei Yang, and Jinsong Huang§, (2013) Mechanisms of Radiation Resistance in Deinococcus Radiodurans R1 by the Reconstruction of Gene Regliatory Network Using Bayesian Network Approach, Journal of Proteomics & Bioinformatics (JPB)